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Organizing biological data
Virus
Metagenomic RNA sequencing from clinical respiratory disease
Ribosome profiling of the genome-reduced bacterium Mycoplasma pneumoniae
tRNAs quantification by hydro-tRNA-seq in the genome-reduced bacterium Mycoplasma pneumoniae
whole genome sequencing of Mycoplasma pneumoniae mutants
Respiratory microbiome
Transposon random mutagenesis of Mycoplasma pneumoniae M129 using ProTInSeq protocol along different concentrations and using two positive selection markers (Chloramphenicol acetyltransferase and Erythromycin esterase EreA) and a negative selection marker (barnase)
DNASeq of different Mycoplasma pneumoniae isolated clones presenting a genomic deletion produced by a multi-recombinase engineering protocol
Biosafety circuits for Mycoplasma - DNA-seq for passages 2, 3 and 15 of clonal Mycoplasma pneumoniae biosafety strains to study long-term stability of kill-switch devices
Transposon sequencing to identify random insertions of lox sites in Mycoplasma pneumoniae
DNA sequencing to validate random deletions in Mycoplasma pneumoniae
RNA-seq differential expression analysis of tmRNA (ssrA) mutants in the genome-reduced bacterium Mycoplasma pneumoniae
Genome sequencing of Mycoplasma pneumoniae CV2
Rational engineering of Mycoplasma pneumoniae as attenuated chassis
RNA-seq of Lon and FtsH conditional mutants of Mycoplasma pneumoniae under depleting and inducing conditions
Transposon random mutagenesis of Mycoplasma pneumoniae M129. Samples sequenced for passage numbers 1, 2, 3, 4, 6, 8 and 10, two biological replicates per passage and two technical replicates for passages 2-4.
DNA-seq of an ELMSeq reporter cassette to study impact of C-terminal sequence variations on protein abundance
mycoplasma pneumoniae sequencing
Transcriptome analysis of Mycoplasma pneumoniae VI
5'-end mapping of total Mycoplasma pneumoniae RNA
Mycoplasmoides pneumoniae
Comparative genomics and high-resolution discrimination of Mycoplasma pneumoniae clinical isolates
RNASeq of multiple Mycoplasma species in wild-type condition including: Mycoplasma pneumoniae, Mycoplasma genitalium, Mycoplasma hyopneumoniae, Mycoplasma capricolum, Mycoplasma gallisepticum, Mycoplasma mycoides
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